PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00149793001
Common NameGSBRNA2T00149793001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 297aa    MW: 33724.9 Da    PI: 7.0253
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00149793001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10118164455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h ++Er+RR+++ ++f  L  llP +     kK +K+++L  A+  +k+Lq
  GSBRNA2T00149793001 118 EHVIAERKRREKLSEKFIALSALLPGL-----KKADKITVLDDAISRVKQLQ 164
                          699************************.....9******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.392114163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.5E-15118182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.28E-15118178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-7118164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.66E-9119168No hitNo description
SMARTSM003531.1E-12120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDADFFLTDF SLENIDFDFN IYEEMNVSPV EASMHTQRGQ FSSSFDNQMN LDQLTEKPKP  60
AVKEMMINNK PRVISFDFSS NVSSSLAEED ILMDRLVRCG SKRKACSSST RSPTLAKEHV  120
IAERKRREKL SEKFIALSAL LPGLKKADKI TVLDDAISRV KQLQEQIRKL NEEKEARREM  180
ESMILVKKSK VLFDEEPYLS SSSSSSSHAK FDQLLPEIEA KVVQKEVLIR IHCEKRKGCM  240
INILNTIENL HLRIENSIVL PFGDSTLDIT VLAQMGKDFS VCAVKDLVRN LRLSMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1122127ERKRRE
2123128RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00149793001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013634830.10.0PREDICTED: transcription factor bHLH19
RefseqXP_013691463.10.0PREDICTED: transcription factor bHLH19-like
SwissprotQ1PF161e-152BH019_ARATH; Transcription factor bHLH19
TrEMBLA0A078DKX70.0A0A078DKX7_BRANA; BnaC04g35310D protein
STRINGBra030208.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49227146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.11e-141bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]